Multiscale simulations of chemical kinetics

Multiscale simulations of chemical kinetics

A theme in the last decade of computational systems biology has been how molecular noise is a factor that needs to be acc ounted for,…

Software and applied cloud computing

Software and applied cloud computing

Open source computational science and engineering (CSE) software is an integral part of methodology-oriented computational research and a priority in the group. Due to the ongoing…

Simulation of Stochastic Multicellular Systems

Simulation of Stochastic Multicellular Systems

While we have learned a lot about gene regulation and control from single cell models, there is a limit to what can be understood without…

Smart systems for computational experiments

Smart systems for computational experiments

We seek to develop intelligent cloud services to support more productive use of simulations for complex computational experimentation. The integration between on the one hand…

We are a computational science and engineering research group located at the Division of Scientific Computing at the Department of Information Technology, Uppsala University. With a core in scientific computing and systems biology, our mission is to develop next-generation tools for smart and efficient computational experimentation. A  prominent application area is systems biology, where we seek to gain insight into spatial and temporal aspects of cellular regulatory systems.  To that effect, we pursue a broad range of topics ranging from development of multiscale methods for spatial stochastic simulations to modeling of multicellular systems to cloud computing and development of smart and interactive computational science and engineering software. We are participating in the eSSENCE e-Science collaboration and the  Computational Systems Biology (CSB) and Distributed Computing Applications (DCA) groups at the department of Information Technology.